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Enzymatic and structural analyses of PA5540: a gamma-carbonic anhydrase of Pseudomonas aeruginosa PAO1

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Title: Enzymatic and structural analyses of PA5540: a gamma-carbonic anhydrase of Pseudomonas aeruginosa PAO1
Author: White, Sean
Department: Department of Molecular and Cellular Biology
Program: Molecular and Cellular Biology
Advisor: Kimber, Matthew
Abstract: γ-Carbonic anhydrases are a family of enzymes which catalyze the metal-dependent reversible hydration of carbon dioxide. Based on crystal structures obtained in our lab, we propose that PA5540 of Pseudomonas aeruginosa PAO1 is a novel member of this class. This protein is strongly upregulated in sputum from the lungs of cystic fibrosis patients, suggesting a possible role in pathogenesis. From a biochemical standpoint, PA5540 is intriguing as it is organized in an operon whose genes are only expressed when intracellular zinc is low. This suggests that this ortholog may use a metal other than the zinc as its catalytic metal, with iron and cobalt being candidates. A Pseudomonas putida-based expression system was used to overexpress PA5540 and the ability of PA5540 to act as a functional carbonic anhydrase was tested using a pH indicator dye-based spectrophotometric assay. A maximal observed turnover rate of 660 ± 230 s-1 was obtained at pH 8.3, and a rate of 341± 67 s-1 was obtained at pH 7.5. Due to technical difficulties regarding the assay, true kcat and Km values have not yet been determined. If these values are obtained in the future, atomic absorption spectroscopy can be used to determine and quantify the active site metal. Currently approved sulfonamide drugs are known to inhibit the well characterized γ-carbonic anhydrase, Cam of Methanosarcina thermophila. By demonstrating the activity of PA5540, this research may lead to future methods of combating lung infection, should it be demonstrated that PA5540 contributes to pathogenesis.
URI: http://hdl.handle.net/10214/7815
Date: 2014-01
Rights: Attribution-NonCommercial-ShareAlike 2.5 Canada


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Attribution-NonCommercial-ShareAlike 2.5 Canada Except where otherwise noted, this item's license is described as Attribution-NonCommercial-ShareAlike 2.5 Canada