Solid-State NMR Investigations of Transmembrane Proteins - New Approaches for Signal Enhancement and In Situ Studies of Anabaena Sensory Rhodopsin

Date

2016-07-08

Authors

Ward, Meaghan Elizabeth

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Publisher

University of Guelph

Abstract

Membrane proteins account for 30% of all proteins and perform many important roles in the cell, yet are difficult to study due to the necessity to maintain their lipidic environment during all stages of purification and characterization. Often during these processes the lipid environment is drastically altered, and high resolution studies of membrane protein structure commonly require the use of membrane-mimetic environments. Solid-state NMR (SSNMR) spectroscopy using magic angle spinning (MAS) is a rapidly developing and promising technique to study such proteins in their native, lipid-associated environment. However, these experiments are generally limited by sensitivity. This thesis centers upon the development and application of novel SSNMR approaches to study large, seven transmembrane (7TM) α-helical proteins – a class of proteins to which microbial rhodopsins, which we use as model systems for these experiments, belong. First, the sensitivity available for such samples under ultrafast MAS conditions (> 50 kHz) was investigated. As smaller sample volumes are necessary at these spinning frequencies, low power decoupling and paramagnetic enhancement of the signal relaxation rate were implemented to facilitate a condensed data collection scheme. Under these conditions, it was found that the paramagnetic relaxation enhancement was uniformly distributed throughout the proteins and that sensitivity comparable to that available in larger rotors was obtainable with proton detection. Next, the implementation of proton detection to specifically detect the mobile regions of proteins was developed. Using these methods it was found that for the mobiles regions, ~10x increase in sensitivity was available and that both the loop regions and lipid and carbohydrates tightly bound to these proteins could be studied. Finally, methods with which to characterize membrane proteins in the native E. coli membrane environment were developed and implemented, using Anabaena sensory rhodopsin (ASR) as an example. Small, site-specific perturbations in the structure of ASR, which occur as the local membrane milieu changes, indicate that the protein can subtly adapt to its environment without large structural rearrangement. In summary, this work has advanced our ability to use MAS-SSNMR spectroscopy as a structural probe for large and oligomeric membrane proteins.

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Keywords

solid state nuclear magnetic resonance, membrane protein, proton detection, In situ, microbial rhodopsin, magic angle spinning, paramagnetic relaxation, condensed data collection

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